Submission
Number |
Poster
Title |
Poster
Authors |
1 |
Genome-Scale
Metabolic Network Model of Arabidopsis |
Cristiana
G.O. Dal’Molin,
Lake Quek, and Lars K. Nielsen |
4
|
Understanding
molecular weight control in bacterial fermentation: a systems
biotechnology approach. |
Esteban
Marcellin, Wendy Y. Chen, Colin Archer and Lars K. Nielsen |
5
|
Bioinformatic
analysis indicates a relationship between CpG islands &
nuclear protein function, as well as a Stop Codon Usage
Bias |
Paul
Berkman and Guang Bin Liu |
6
|
Using
Multivariate Curve Resolution to Improve Proteomics Biomarker
Discovery |
Li
Chen |
8 |
Detecting
Z-DNA Forming Regions in the Human Genome |
Jie
Xiao, Peter Dröge and Jinming Li |
9
|
Vulval
Development Modeling Using Hybrid Functional Petri Net with
extension and its Simulation-based Formal Model Validation
|
Chen
Li Masao Nagasaki,
Kazuko Ueno and Satoru Miyano |
10
|
Discovery
of Functional miRNA-mRNA Regulatory Modules with Computational
Methods |
Bing
Liu, Jiuyong Li
and Anna Tsykin |
13
|
Prediction
of the O-glycosylation and Environments around the crowded
and isolated O-glycosylation sites a |
Yukiko
Nakajima, Hirotaka Sakamoto and Kazutoshi Sakakibar |
14
|
Comparison
of Brachyspira central metabolism pathways using genomic
sequence data Bellgard |
Phatthanaphong
Wanchanthuek,
David J. Hampson and Matthew |
15
|
Strain
improvement for production of homo-organic acid based on
multi-objective simulation |
Sang
Yup Lee, Jong Myoung Park
and Tae Yong Kim |
16
|
Hydrophobic-Hydrophilic
Patterns and their Effects on the Protein Folding Prediction
Process |
Trent
Higgs, Bela Stantic
and Md Tamjidul Hoque |
17
|
Reconstruction
of a Genome-scale Metabolic Network for Clostridium acetobutylicum
ATCC 824 and an Investigation of Its Metabolic Features |
Sang
Yup Lee, Joungmin Lee
and Hongseok Yun |
18 |
Pathway
Analysis for Succinic acid Production of Mannheimia succiniciproducens
and Escherichia coli |
Sang
Yup Lee, Tae Yong Kim
and Hyung Rok Choi |
19 |
A
subnet algorithm for genome scale metabolic networks |
Wynand
S. Verwoerd |
20
|
Integrating
Gene Expression Studies Via Statistical Synthesis |
Anna
Elizabeth Campain
and Jean Yee Hwa Yang |
21 |
A
comparative analysis of noncoding and protein-coding RNAs
in the mammalian transcriptome |
Tim
R. Mercer, Marcel E. Dinger
and John S. Mattick |
22
|
A
mathematical model to account for quantitative iterative
effect of TNF-a positive feedback mechanism on inflammatory
cascade in TLR-4 mediated TNF-a signalling pathway |
Bryan
Essien, Michael Kotiw,
Harry Butler, Dmitry Strunin
and Tony Roberts |
23
|
Visualising
and Testing for Difference in High Throughput Bio-Imaging
|
Nicholas
A Hamilton, Jack Wang, Markus Kerr and Rohan D. Teasdale |
24 |
STREAM
: A Practical Workbench for the Quantitative Modeling of
Transcription |
Denis
C. Bauer and Timothy L. Bailey |
25
|
Identifying
microRNA Networks and Motifs |
Ilana
Lichtenstein, Albert Zomaya
and Jennifer Gamble |
26
|
Eukaryotic
Signature Proteins: Guides to modern eukaryotic Parasites |
Jian
Han, Lesley Collins, Patrick
Biggs and David Penny |
27 |
Bioinformatics
Services at AgResearch NZ |
Nauman
Jawad Maqbool, Anette
Becher and Alan McCulloch |
29
|
Signal
Peptide Sequence Analysis and Cleavage Site Prediction |
Takehito
Yamada and Yoichi Hayashi |
30
|
Gene
Specific Co-regulation Discovery from Gene Microarray Data
|
Ji
Zhang, Qing Liu, Kai Xu and Paulo
de Souza |
31 |
An
Algorithm Determining Delay Times in a Mark Graph for Smooth
Signal Flowing |
Kanji
Hioka, Yoshimasa Miwa,
Chen Li, Qi-Wei Ge, Hiroshi
Matsuno and Satoru Miyano |
32 |
Annotating
a partial transcriptome of the marine snail Dicathais orbita’s
hypobranchial gland using suppressive subtractive hybridization
and BLAST2GO |
Patrick
W. Laffy, Kirsten Benkendorff
and Catherine A. Abbott |
33
|
A
Distance Measure for Phylogenetic Analysis of Genomes |
Minh
Duc Cao, Trevor I. Dix
and Lloyd Allison |
34
|
In
silico Functional Proteomic Re-annotation of Escherichia
coli K12 |
Aravindhan
Ganesan, Ramesh
Kumar Gopa and Sathish Kumar Radhakrishnan |
35
|
High
Performance Multiple Sequence Alignment Algorithms for Comparison
of Microbial Genomes |
Manal
Helal, Hossam El-Gindy,
Bruno Gaeta and Vitali Sinchenko |
36
|
Comparison
of feature extraction methods with microarray gene-expression
data |
Takanobu
Miyamoto and
Yoshihiko Hamamoto |
37
|
A
Bi-ordering Approach to Linking Gene Expressions with
Clinical Annotations in Cancer |
F.
Shi, G. MacIntyre, C. Leckie,
I. Haviv, A. Boussioustas
and A. Kowalczyk |
38 |
Practical
Evolutionary Genomics from Short-Read Sequence Experiments
|
Patrick
J. Biggs, Lesley J. Collins,
Sylvia Xiowei Chen and Nigel French |
39 |
Fluorescence
Intensity Isotherms and Distributions on Oligonucleotide
Microarrays |
C.
J. Burden |
40
|
Effect
of the EGF binding cooperativity on EGFR activation on the
cell surface |
Takashi
Naka |
41
|
Structural
model for group-2 phytocystatin revealed the protein folds
resembling to human latexin |
Yi-Sheng
Cheng, Hsin-Yi Wu
and Kai-Wun Yeh |
42 |
Effects
of Different Normalisation and Analysis Procedures on Illumina
Gene Expression Microarray Data |
Dan
Johnstone, Carlos Riveros,
Pablo Moscato and Liz Milward |
43
|
Establishing
A Research-Teaching Nexus In Genome Informatics |
Dan
Johnstone, Carlos Riveros
and Liz Milward |
44
|
Microarray
studies detecting changes in microRNA expression in cancer
|
Anna
Tsykin, Philip Gregory, Michael Michael, Bas Wijnhoven,
Enrico
Garattini and Gregory Goodall |
45 |
Link
Prediction in Metabolic Networks using Topology-based Mixture
Models |
Akira
Ninagawa and Koji Eguchi |
46
|
Integrated
prediction of transcription factor binding sites and interactions
in bacteria: a comparative genomics approach |
Xin-Yi
Chua and James M. Hogan |
47
|
Phosphorylation
Site Prediction Tool For Channel Proteins Using Statistical
Machine Learning Techniques |
Devasia
Arun George, Kwoh Chee
Keong and Nikhil Prasanna Jayan |
48
|
Strategies
for computational transcription factor binding
site discovery in humans |
Geo
Macintyre, James Bailey,
Adam Kowalczyk and Izhak Haviv |
49
|
Distribution
of DNA Palindromes in short Genomes |
Yong
Kheng Goh |
50 |
LocPPI
: A Protein-Protein Interaction System for Analysis of Cellular
Proteome |
Pan-Gyu
Kim, Hwa Jung Seo, Suk
Hoon Jung and Kiejung Park |
51
|
Automatic
layout tool for large-scale metabolic pathway models based
on KEGG Atlas |
Nobuhiro
Kido, Nobuaki Kono,
Kazuharu Arakawa and Masaru Tomita |
52
|
Workflow
and Its Navigation System Using Web API for Biology (WABI)
|
Yeondae
Kwon, Yasumasa Shigemoto, Yoshikazu Kuwana and Hideaki Sugawara |
53 |
Extracting
biological knowledge from SVM models capable of distinguishing
alternative and constitutive splicing |
T.
Murlidharan Nair
and Michael Gribskov |
54 |
Identification
of microRNAs with regulatory potential using a matched microRNA-mRNA
time course data |
Vivek
Jayaswal, Yee Hwa Yang,
Mark Lutherborrow and David Ma |
55
|
The
evolutionary processes underlying the emergence of the
a-actinin gene family |
Monkol
Lek, Daniel G MacArthur,
Nan Yang and Kathryn N North |
56
|
Microarray
Quality Control: Identifying and Dealing with less than
Perfect Data |
Nathan
S. Watson-Haigh, Haja N. Kadarmideen, Greg Nattrass and
Melanie McDowall |
57
|
Using
simple rules on presence and positioning of motifs for promoter
structure modelling and tissue-specific expression prediction
|
Alexis
Vandenbon and Kenta Nakai |
58
|
Specificity-based
Ranking Algorithm for Finding Associated Terms from MEDLINE
Abstracts |
Yeondae
Kwon and Hideaki Sugawara |
59
|
Probability-based
Glycosphingolipid Prediction from Mass Spectrometry Data
|
Kazuhito
Yokoi, Saki Itonori, Mutsumi Sugita and Masahiro Ito |
60
|
Weighted
Co-Expression Gene Modules Reveals Candidate Biomarkers
for Sheep Intestinal Parasite Resistance |
Haja
N. Kadarmideen, Nick Andronicos, Nathan S. Watson-Haigh,
Peter Hunt
and Ross Windon |
61
|
The
Functional Flow of Drug Target Protein in Metabolic Pathway
|
Hwie-Sung,
Jung Bora Hyun
Woo-Hyuk and Jang Dong-Soo Han |
62 |
Predicting
tissue-specific transcription factor binding sites with
chromatin modification information |
Tom
Whitington, Andrew Perkins
and Tim Bailey |
63
|
Developing
a Bioinformatics Grida-ware Client |
Steven
Stones-Havas
and Allen Rodrigo |
64
|
DNA
copy-number alterations underlie gene expression differences
between microsatellite stable and unstable colorectal cancers |
Robert
N Jorissen, Lara Lipton,
Peter Gibbs, Timothy J Yeatman,
Claus Lindbjerg Andersen
and Oliver M Sieber |
65
|
Verification
of Bmal and Clock Gene Functions in Circadian Rhythms by
Simulation |
Akio
Matsui, Natsumi Mito, Hiroshi Matsuno, Shin-ichi T. Inouye
and Satoru Miyano |
66
|
G-language
Genome Analysis Environment Version 2:
Integrated workbench for computational genome sequence analysis
|
Kazuharu
Arakawa and
Masaru Tomita |
67
|
Web-based
Zoomable Pathway Browser using KEGG Atlas and Google Maps
API |
Nobuaki
Kono, Kazuharu Arakawa, Nobuhiro Kido, Ryu Ogawa, Kazuki
Oshita, Keita Ikegami, Satoshi Tamaki and Masaru Tomita |
68
|
DRIPS
Database of Repeats in Protein Sequences |
Rima
Kumari and Nita Parekh |
69
|
Promoter
sequence analysis of differentially expressed genes in sheep
following a nematode parasite challenge |
Shivashankar
Hiriyur Nagaraj, Aaron Ingham andAntonio Reverter |
71
|
Molecular
Evolution of PMS2 Gene Family in Higher Primates and Its
Possible Biological Implications |
George
V. Shpakovski, Elena K. Shematorova and Dmitry
G. Shpakovski |
72
|
Expression
Profile of Human PMS2-like Genes: Bioinformatic and Experimental
Studies |
Elena
K. Shematorova, Dmitry G. Shpakovski and George V. Shpakovski |
73
|
Query
Protection in DNA Homology Search |
Shogo
Shimizu and Yeondae Kwon |
74
|
Analysis
of the Proteins with Positive Charge Autocorrelation in
Amino Acid Sequences from Eukaryotes |
Runcong
Ke, Masashi Sonoyama
and Shigeki Mitaku |
75 |
The
New South Wales Systems Biology Initiative |
Simone
Li and Marc R. Wilkins |
76
|
GEOMI:
a tool for integrated systems biology research |
Simone
Li, Apurv Goel, Adam Lee, Chi Nam Ignatius Pang and Marc
R. Wilkins |
77
|
A
Weighted Average Difference Gene-ranking for Gene Set Enrichment
Analysis of Microarray Data |
Jaeyoung
Kim, Hyungmin Lee and Miyoung Shin |
78
|
Functional
organization of transcript sequences as gene expression
data |
Hidemasa
Bono, Shoko Kawamoto, Kousaku Okubo and Toshihisa Takagi |
79
|
Gentrepid:
a webserver for candidate disease gene prediction |
Erdahl
T. Teber, Jason Y. Liu,
Richard A. George, Sara Ballouz,
Chi N. I. Pang, Boer Xu, Naresh P. Bains, Duncan B. Sparrow,
Robin Otway, Guanglan Guo, Diane Fatkin
and Merridee A. Wouters |
80
|
Improving
alignment of hypervariable regions for varDB |
C.
Nelson Hayes, Diego Diez, Nicolas Joannin, Minoru Kanehisa,
Mats Wahlgren, Craig E. Wheelock and Susumu Goto |
81
|
CHESS
(CgHEexpreSS) : A software for association study of copy
number changes and correlation analysis between copy number
changes and gene expression |
Lee
Mi-Kyung and Kim Yang-Seok |
82
|
Prediction
of Protein Nuclear Localization Based on Smoothed Evolutionary
Information and Probabilistic La-tent Semantic Indexing
|
Emily
Chia-Yu, Su Jia-Ming Chang,
Ting-Yi Sung and Wen-Lian Hsu |
83 |
A
framework for mining GenBank: Implementation for the varDB
project |
Diego
Diez, Nelson Hayes, Nicolas Joannin, Minoru Kanehisa, Mats
Wahlgren, Craig E. Wheelock and Susumu Goto |
84 |
Life
Science Database Portal Site: lifesciencedb.jp |
Shin
Kawano, Hidemasa Bono, Shoko Kawamoto, Kousaku Okubo, and
Toshihisa Takagi |
85
|
Biopieces:
a bioinformatics toolset and framework |
Martin
Asser Hansen, Chol Hee Jung, Selene Fernandez Valverde
and Harald Oey |
86
|
Modeling
the bacterial transcription regulatory jigsaw |
Scott
David, Mann Yi-Ping
and Phoebe Chen |
87
|
Inferring
deep duplication nodes in vertebrate protein families |
Karin
S. Kassahn and Mark A. Ragan |
88 |
Evaluation
and expression of “drug-likeness” of small molecules
using Semantic Web technologies |
Joo-Young
Choi, Melissa J. Davis
and Mark A. Ragan |
89
|
Morphogenetic
Evolvable Hardware (MG-EHW) Processes and their suitability
to Self-repairing Circuits |
Tim
Gurnett, Ross Hayward
and Joaquin Sitte |
90
|
Similar
sequence or structure: A kernel function that brings together
the best of two worlds |
Isye
Arieshanti, Mikael Bodén, Stefan Maetschke and Fabian
A. Buske |
91
|
Development
and Evaluation of a Prototype System for the Inference of
Genetic Networks Using Evolutionary Computation |
Kouji
Tanaka and Hayato Yamana |
92
|
Sequencing
the Acropora millepora transcriptome |
Sylvain
Foret, David Hayward,
Eldon Ball and David Miller |
93
|
A
Web Service Framework for Advanced Bioinformatics |
Dominique
Gorse, David Wood, Mhairi Marshall and Jeremy Barker |
94
|
Investigating
genome aberration and microRNA correlation in ovarian cancer
|
Raj
K. Gaire, Ian G. Campbell,
Jennifer Bearfoot, Manasa
Ramakrishna, Kylie L. Gorringe, James Bailey, Peter J. Stuckey
and Izhak Haviv |
95 |
Using
Comparative Genomics to Associate Transcription Factors
with their Roles |
Fabian
A. Buske, Mikael Boden
and Timothy L. Bailey |
96
|
Establishment
of Clinical OMICS Database (iCOD) by Integrating Clinical
and Molecular Biological Information, for Systems Pathological
Research |
Hiroshi
Mizushima and Hiroshi Tanaka1 |
97 |
Alternative
Measures of Transcription Factor Activity from Expression
Data |
Antonio
Reverter, Aaron Ingham, Nick Hudson, Shivashankar Hiriyur
Nagaraj
and Brian P Dalrymple |
98
|
Integration
of Protein Interaction and Metabolic Data for Subcellular
Localization Prediction |
Gaurav
Kumar, Adrian P. Cootes, Helena Nevalainen and Shoba Ranganathan |
99
|
The
characterisation of upstream peptides (uPEPs) |
Adam
Skarshewski, Joseph A. Rothnagel and Ross Smith |
100
|
CoreAligner:
Multiple genome alignment for identifying the genomic core
among moderately related genomes |
Ikuo
Uchiyama |
101
|
Parallel
Markov Clustering for Large-scale Protein-Protein Interaction
Networks using MPI |
Alhadi
Bustamam, Muhammad Shoaib Sehgal, Simon Wong, Mark A Ragan
and Kevin Burrage |
102 |
Identification
of transcription factors that regulate intronic microRNAs
|
Jiyuan
An, Yongjun Fan, Anthony G Beckhouse, Alistair M Chalk
and Christine A Wells |
103
|
Incorporating
tiling array expression data into a gene Predictor |
Benjamin
Lansdell, Terry Speed
and Anthony Papenfuss |
105
|
Australian
Mirror of the UCSC Genome Browser |
Michael
Pheasant, Matthew Bryant, Cas Simons, Wes Barris, Amanda
Miotto, Stuart Stephen, Othmar Korn, Dominique Gorse, Jeremy
Barker, Vladimir Brusic, Brian P. Dalrymple, Bernard M.
Degnan, Lyn Griffiths, James Hogan, Mark A. Ragan, Paul
Roe, Peter Timms, Christine A. Wells, and John S. Mattick |
106
|
A
Method for Protein Functional Flow Configuration and Validation
|
Woo-Hyuk,
Jang Suk-Hoon Jung and Dong-Soo Han |
107
|
Quantitative
Analysis of Central Metabolic Pathway for
Modeling and Simulation |
Hirotada
Mori, Hitomi Dose, Yuto Ikegami, Tomoaki Yamamotoya, Barry
L. Wanner and Hirosi Matsuno |
108
|
A
Literature Management System with A Recommendation Function
at Database Center for Life Science |
Yasunori
Yamamoto and Toshihisa Takagi |
109
|
Efficient
analysis for large scale genomic data on Support Vector
Machine using Data Resource Management |
Seol-Hee
Bae, Hyo-Jeong Ban, Keun-Joon Park and Kyung-Soo Oh |
110
|
Manipulating
Biochemical Reactions on Octave/Matlab |
Yuki
Hyodo and Jun Ohta |
111
|
BIOLISM
– A System for Searching and Mining Bio-Literatures
|
Gabriel
Pui, Cheong Fung
and Xiaofang Zhou |
112 |
Sequence
Analysis of Mitochondrial -barrel Outer Membrane Proteins
|
Kenichiro
Imai, M. Michael Gromiha
and Paul Horton |
113
|
TGG
based Automatic Transformation between SBML and other Biological
Modeling Languages |
Shijia
Zhu, Haijun Tao
and Yadong Wang |
114
|
TGG
based Automatic Transformation between SBML and other Biological
Modeling Languages |
Shijia
Zhu, Haijun Tao
and Yadong Wang |
115
|
Development
of the www.EcoliHub.org Information resource for experimentation
and modeling |
Barry
L. Wanner, Sara Ess, Kirill A. Datsenko, Rikiya Takeuchi
and Hirotada Mori |
116
|
The
total quasi-steady-state approximation for the Mitogen-Activated
Protein Kinase cascade |
Shev
MacNamara, Alberto M. Bersani, Kevin Burrage and, Roger
B. Sidje |
117
|
Biology-driven
clinical management of paediatric acute lymphoblastic leukaemia
through integrative data mining and visualization of genome-wide
gene expression and SNP profiles |
Daniel
Catchpoole, Dachuan Guo,
Ahmed Al Oqaily, Paul Kennedy
and Simeon Simoff |
